PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000953.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 268aa    MW: 29088.2 Da    PI: 9.4879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000953.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.2e-1174119454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h+e+ErrRR+riN  ++ Lr ++P a     + ++Ka+ L ++v+ +k+L
  Do000953.1  74 VHSEAERRRRERINAHLAALRMMIPDA-----RQMDKATLLARVVRQLKDL 119
                 59************************9.....78**********9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-1263124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.53870119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-874119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1174124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-976125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.673160236IPR002912ACT domain
Gene3DG3DSA:3.30.70.2604.3E-5161209No hitNo description
SuperFamilySSF550211.6E-5161209No hitNo description
CDDcd048739.98E-10162229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAPASACQPF QEGKQRQQHL PLRHGDGSVL PPVYRGAVLP LRQAGSAPPP PPPAAQEPPL  60
SSGRSVTEAQ ALKVHSEAER RRRERINAHL AALRMMIPDA RQMDKATLLA RVVRQLKDLK  120
RKAAETTPPL HIPAEANSVT VDCYTGAAAV GYGRPVAYVR ASVSCDDRPG LLADLAGEFR  180
RLRLKPLRAD VSSLGGRARC EFMLCGGEEG DTVTAGRVKA LEEGVRQALA NAACPEMAYG  240
CNYRSRRQRV LESHYVLGHG LDVDDHGW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978282.11e-130PREDICTED: transcription factor bHLH51-like
TrEMBLK3YDA91e-100K3YDA9_SETIT; Uncharacterized protein
STRINGSi012213m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-28bHLH family protein